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High-resolution microscope

Primary paper

  • Takai, A., Nakano, M., Saito, K., Haruno, R., Watanabe, T. M., Ohyanagi, T., et al.
    "Expanded palette of Nano-lanterns for real-time multicolor luminescence imaging"
    Proc. Natl. Acad. Sci. U.S.A. 112, 4352-4356 (2015) doi:10.1073/pnas.1418468112
  • Hayashi, S. & Okada, Y.
    "Ultrafast superresolution fluorescence imaging with spinning disk confocal microscope optics "
    Mol. Biol. Cell 26, 1743-1751 (2015) doi:10.1091/mbc.E14-08-1287
  • Chiba, K., Araseki, M., Nozawa, K., Furukori, K., Araki, Y., Matsushima, T., et al.
    "Quantitative analysis of APP axonal transport in neurons: role of JIP1 in enhanced APP anterograde transport"
    Mol. Biol. Cell 25, 3569-3580 (2014) doi:10.1091/mbc.E14-06-1111
  • Semenova, I., Ikeda, K., Resaul, K., Kraikivski, P., Aguiar, M., Gygi, S., et al.
    "Regulation of microtubule-based transport by MAP4"
    Mol. Biol. Cell 25, 3119-3132 (2014) doi:10.1091/mbc.E14-01-0022
  • Yaginuma, H., Kawai, S., Tabata, K. V., Tomiyama, K., Kakizuka, A., Komatsuzaki, T., et al.
    "Diversity in ATP concentrations in a single bacterial cell population revealed by quantitative single-cell imaging"
    Sci. Rep. 4, 6522 (2014) doi:10.1038/srep06522
  • Uno, S., Kamiya, M., Yoshihara, T., Sugawara, K., Okabe, K., Tarhan, M. C., et al.
    "A spontaneously blinking fluorophore based on intramolecular spirocyclization for live-cell super-resolution imaging"
    Nat. Chem. 6, 681-689 (2014) doi:10.1038/nchem.2002
  • Hayashi, K., Pack, C. G., Sato, M. K., Mouri, K., Kaizu, K., Takahashi, K., et al.
    "Viscosity and drag force involved in organelle transport: Investigation of the fluctuation dissipation theorem"
    Eur. Phys. J. E 36, 136 (2013) doi:10.1140/epje/i2013-13136-6
  • Mouri, K. & Sako, Y.
    "Optimality Conditions for Cell-Fate Heterogeneity That Maximize the Effects of Growth Factors in PC12 Cells"
    PLoS Comput. Biol. 9, e1003320 (2013) doi:10.1371/journal.pcbi.1003320
  • Sato, Y., Mukai, M., Ueda, J., Muraki, M., Stasevich, T. J., Horikoshi, N., et al.
    "Genetically encoded system to track histone modification in vivo"
    Sci. Rep. 3, 2436 (2013) doi:10.1038/srep02436
  • Ota, S., Hisano, Y., Muraki, M., Hoshijima, K., Dahlem, T. J., Grunwald, D. J., et al.
    "Efficient identification of TALEN-mediated genome modifications using heteroduplex mobility assays"
    Genes to Cells 18, 450-458 (2013) doi:10.1111/gtc.12050
  • Hisano, Y., Ota, S., Arakawa, K., Muraki, M., Kono, N., Oshita, K., et al.
    "Quantitative assay for TALEN activity at endogenous genomic loci"
    Biology Open 2, 363-367 (2013) doi:10.1242/bio.20133871
  • Sakuma, T., Hosoi, S., Woltjen, K., Suzuki, K., Kashiwagi, K., Wada, H., et al.
    "Efficient TALEN construction and evaluation methods for human cell and animal applications"
    Genes to Cells 18, 315-326 (2013) doi:10.1111/gtc.12037
  • Yajima, H., Ogura, T., Nitta, R., Okada, Y., Sato, C. & Hirokawa, N.
    "Conformational changes in tubulin in GMPCPP and GDP-taxol microtubules observed by cryoelectron microscopy "
    J. Cell Biol. 198, 315-322 (2012) doi:10.1083/jcb.201201161
  • Nakata, T., Niwa, S., Okada, Y., Perez, F. & Hirokawa, N.
    "Preferential binding of a kinesin-1 motor to GTP-tubulin-rich microtubules underlies polarized vesicle transport "
    J. Cell Biol. 194, 245-255 (2011) doi:10.1083/jcb.201104034
  • Nitta, R., Okada, Y. & Hirokawa, N.
    "Structural model for strain-dependent microtubule activation of Mg-ADP release from kinesin "
    Nat. Struct. Mol. Biol. 15, 1067-1075 (2008) doi:10.1038/nsmb.1487
  • Nishinari, K., Okada, Y., Schadschneider, A. & Chowdhury, D.
    "Intracellular transport of single-headed molecular motors KIF1A "
    Phys. Rev. Lett. 95, 118101 (2005) doi:10.1103/PhysRevLett.95.118101
  • Okada, Y., Takeda, S., Tanaka, Y., Belmonte, J. & Hirokawa, N.
    "Mechanism of nodal flow: A conserved symmetry breaking event in left-right axis determination "
    Cell 121, 633-644 (2005) doi:10.1016/j.cell.2005.04.008
  • Tanaka, Y., Okada, Y. & Hirokawa, N.
    "FGF-induced vesicular release of Sonic hedgehog and retinoic acid in leftward nodal flow is critical for left-right determination "
    Nature 435, 172-177 (2005) doi:10.1038/nature03494

Review

  • Okada, Y. & Nakagawa, S.
    "Super-resolution imaging of nuclear bodies by STED microscopy"
    Methods Mol. Biol. 1262, 21-35 (2015)
  • Hirokawa, N., Tanaka, Y. & Okada, Y.
    "Cilia, KIF3 molecular motor and nodal flow "
    Curr. Opin. Cell Biol. 24, 31-39 (2012) doi:10.1016/j.ceb.2012.01.002
  • Okada, Y. & Hirokawa, N.
    "Observation of nodal cilia movement and measurement of nodal flow. "
    Methods Cell Biol. 91, 265-285 (2009) doi:10.1016/S0091-679X(08)91014-1
  • Hirokawa, N., Nitta, R. & Okada, Y.
    "The mechanisms of kinesin motor motility: lessons from the monomeric motor KIF1A "
    Nat. Rev. Mol. Cell Biol. 10, 877-884 (2009) doi:10.1038/nrm2807
  • Hirokawa, N., Okada, Y. & Tanaka, Y.
    "Fluid dynamic mechanism responsible for breaking the left-right symmetry of the human body: The nodal flow "
    Annu. Rev. Fluid Mech. 41, 53-72 (2009) doi:10.1146/annurev.fluid.010908.165141
  • Hirokawa, N., Tanaka, Y., Okada, Y. & Takeda, S.
    "Nodal flow and the generation of left-right asymmetry "
    Cell 125, 33-45 (2006) doi:10.1016/j.cell.2006.03.002
  • Lawrence, C., Dawe, R., Christie, K., Cleveland, D., Dawson, S., Endow, S., et al.
    "A standardized kinesin nomenclature "
    J. Cell Biol. 167, 19-22 (2004) doi:10.1083/jcb.200408113

Book

  • Hirokawa, N., Tanaka, Y. & Okada, Y.
    "Left-right determination: Involvement of molecular motor KIF3, cilia, and nodal flow"
    In Symmetry Breaking in Biology. (pp.277-292). Cold Spring Harbor Laboratory Press (2010) doi:10.1101/cshperspect.a000802